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Takahashi PI

Project for Systems Biology of Microorganisms

Research interests

Our research areas are Bioinformatics and Systems Biology. Our Bioinformatics approach aims to deeply and clearly understand massive biological experiment data, e.g., sequence data by next generation sequencers. Systems Biology aims to understand how biological systems work and help the experimental design mainly by mathematical modelling approach.

  1. Understanding of heat stress responses in A. fumigatus by multi-omics data
  2. Mathematical modelling approach of zinc ion regulation system in E. coli
  3. Prediction of novel secondary metabolites in Nocardia by comparative genomics
  4. Elucidating of the molecular mechanisms of improved production in B. subtilis strain MGB874


TAKAHASHI, Hiroki Associate Professor
SHIBATA, Saho Assistant Professor
UCHIDA, Momotaka Assistant Professor
ZEN, Machiko Research Promotion Technician
SHIRAI, Emi Research Promotion Technician

Selected Publications

  1. Nakamura, Y., Takahashi, H., et al., Sci Transl Med., 12(551):eaay4068, 2020.
  2. Kusuya, Y., et al., Curr Genet., 63(4):777-789, 2017.
  3. Takahashi, H., et al., BMC Genomics, 18(1):942, 2017.
  4. Imashimizu, M., Afek, A., Takahashi, H. et al., Proc Natl Acad Sci U S A., 113(47):E7409-E7417, 2016.
  5. Imashimizu, M., Takahashi, H. et al., Genome Biol., 16(1):98, 2015.
  6. Takahashi, H. et al., J R Soc Interface., 12(106), 2015.
  7. Hagiwara, D., Takahashi, H. et al., J Clin Microbiol., 52(12):4202-9, 2014.


Scientists & Research